In Mac OS 10.15, miniconda 2.7.16 installation directories for AmberTools
user/apps/amber18/
and ran ./configure
with reference to the following site.
How to install AMBER and AmberTools - Qiita
At this time, the following error occurred and I don't know how to resolve it.
Does anyone know how to solve this problem?
Your AMBERHOME environment variable is not set! Auto set it to:
/Users/makoto/apps/amber18
Checking for updates...
Checking for available patches online. This may take a new seconds...
Available AmberTools 19 patches:
No patches available
AMBER_PREFIX=/Users/makoto/apps/amber18
AMBER_SOURCE=/Users/makoto/apps/amber18
Using the AmberTools miniconda installation in /Users/makoto/apps/amber18/miniconda
version 2.7.16
Obtaining the gnu compiler suite versions, e.g.:
gcc-v
The C version is 11.0.0
Configured with:--prefix=/Library/Developer/CommandLineTools/usr--with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKS/MacOSX.sdk/usr/include/c++/4.2.1
ERROR: Wrong compiler.You specify compiler=gnu but actually using clang
Please change compiler option to clang, or set correct PATH(or CC, CXX) to GNU compiler
I'm sorry, but it was solved after I refreshed my head and reviewed the command line again.
I changed the place where I was running the script as follows, and it worked.
before change
./configure-noX11-macAccelerate gnu
modified
./configure-noX11-macAccelerata clang
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