"RSession Aborted", RNA-seq data analysis by reading gtf file

Asked 2 years ago, Updated 2 years ago, 96 views

I started genome expression analysis as a beginner.
Environment: MacOS, 32GB Memory, Version 4.0.0 with Rtudio

Data after RNA-seq read count analyzed by HiSeq using R package refGenome to make the geneID genSymbol.
I tried many other things like DAVID could not convert well.

When I opened the annotation gtf file (1.46G), it ended with the following comment.

RSession Aborted, Encounters a fatal error.The session was terminated 

Code

library(refGenome)
gtf=ensemblGenome()
read.gtf(gtf, filename = "xxx.gtf")

The same is true of the R console.Is there not enough memory?
I would appreciate it if someone could tell me how to solve it or how to do it.

r bioinformatics

2022-09-30 19:26

1 Answers

The same phenomenon happened before, but after rebooting and reinstalling, it worked easily. Why don't you try it just in case?


2022-09-30 19:26

If you have any answers or tips


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