I started genome expression analysis as a beginner.
Environment: MacOS, 32GB Memory, Version 4.0.0 with Rtudio
Data after RNA-seq read count analyzed by HiSeq using R package refGenome to make the geneID genSymbol.
I tried many other things like DAVID could not convert well.
When I opened the annotation gtf file (1.46G), it ended with the following comment.
RSession Aborted, Encounters a fatal error.The session was terminated
Code
library(refGenome)
gtf=ensemblGenome()
read.gtf(gtf, filename = "xxx.gtf")
The same is true of the R console.Is there not enough memory?
I would appreciate it if someone could tell me how to solve it or how to do it.
The same phenomenon happened before, but after rebooting and reinstalling, it worked easily. Why don't you try it just in case?
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